From 0.2.x to 0.3.x (v3)ΒΆ
BlueETL 0.3.x introduces some breaking changes to support the analysis of SONATA simulation campaigns, along with BBP simulation campaigns.
It automatically uses Blue Brain SNAP or BluePy to open simulations, circuits, and reports.
The specification
version: 2
should be replaced byversion: 3
at the top level of the file.Only when opening SONATA simulation campaigns, the key
population
, containing the name of the node population to be analyzed, must be present in any sectionanalysis.<name>.extraction
.In the
neuron_classes definition
, the parameters of the query not starting with$
must be moved into a sub-dictionary under the keyquery
.If present, any key
$query
must be replaced withquery
.If present, any key
$target
ortarget
must be replaced withnode_set
, regardless of whether it is a SONATA or a BBP simulation campaign. The value ofnode_set
is treated astarget
when opening BlueConfig simulations. Pleas ensure that the specified name exists as a node_set (in case of SONATA simulations), or target (in case of BlueConfig simulations).If present, any key
$limit
must be replaced withlimit
.If present, any key
$gids
must be replaced withnode_id
.
You can see an example of configuration in the new format here: