From 0.2.x to 0.3.x (v3)ΒΆ

BlueETL 0.3.x introduces some breaking changes to support the analysis of SONATA simulation campaigns, along with BBP simulation campaigns.

It automatically uses Blue Brain SNAP or BluePy to open simulations, circuits, and reports.

  1. The specification version: 2 should be replaced by version: 3 at the top level of the file.

  2. Only when opening SONATA simulation campaigns, the key population, containing the name of the node population to be analyzed, must be present in any section analysis.<name>.extraction.

  3. In the neuron_classes definition, the parameters of the query not starting with $ must be moved into a sub-dictionary under the key query.

  4. If present, any key $query must be replaced with query.

  5. If present, any key $target or target must be replaced with node_set, regardless of whether it is a SONATA or a BBP simulation campaign. The value of node_set is treated as target when opening BlueConfig simulations. Pleas ensure that the specified name exists as a node_set (in case of SONATA simulations), or target (in case of BlueConfig simulations).

  6. If present, any key $limit must be replaced with limit.

  7. If present, any key $gids must be replaced with node_id.

You can see an example of configuration in the new format here: